<?xml version="1.0" encoding="UTF-8"?><xml><records><record><source-app name="Biblio" version="7.x">Drupal-Biblio</source-app><ref-type>17</ref-type><contributors><authors><author><style face="normal" font="default" size="100%">Bodénès, Catherine</style></author><author><style face="normal" font="default" size="100%">Chancerel, Emilie</style></author><author><style face="normal" font="default" size="100%">Gailing, Oliver</style></author><author><style face="normal" font="default" size="100%">Vendramin, Giovanni G</style></author><author><style face="normal" font="default" size="100%">Bagnoli, Francesca</style></author><author><style face="normal" font="default" size="100%">Durand, Jerome</style></author><author><style face="normal" font="default" size="100%">Goicoechea, Pablo G</style></author><author><style face="normal" font="default" size="100%">Soliani, Carolina</style></author><author><style face="normal" font="default" size="100%">Villani, Fiorella</style></author><author><style face="normal" font="default" size="100%">Mattioni, Claudia</style></author><author><style face="normal" font="default" size="100%">Koelewijn, Hans Peter</style></author><author><style face="normal" font="default" size="100%">Murat, Florent</style></author><author><style face="normal" font="default" size="100%">Salse, Jerome</style></author><author><style face="normal" font="default" size="100%">Roussel, Guy</style></author><author><style face="normal" font="default" size="100%">Boury, Christophe</style></author><author><style face="normal" font="default" size="100%">Alberto, Florian</style></author><author><style face="normal" font="default" size="100%">Kremer, Antoine</style></author><author><style face="normal" font="default" size="100%">Plomion, Christophe</style></author></authors></contributors><titles><title><style face="normal" font="default" size="100%">Comparative mapping in the Fagaceae and beyond with EST-SSRs.</style></title><secondary-title><style face="normal" font="default" size="100%">BMC plant biology</style></secondary-title></titles><keywords><keyword><style  face="normal" font="default" size="100%">EST-SSR</style></keyword><keyword><style  face="normal" font="default" size="100%">linkage maps</style></keyword><keyword><style  face="normal" font="default" size="100%">Markers</style></keyword><keyword><style  face="normal" font="default" size="100%">oak</style></keyword><keyword><style  face="normal" font="default" size="100%">tranferability (voyant)</style></keyword></keywords><dates><year><style  face="normal" font="default" size="100%">2012</style></year></dates><volume><style face="normal" font="default" size="100%">12</style></volume><pages><style face="normal" font="default" size="100%">153</style></pages><language><style face="normal" font="default" size="100%">eng</style></language><abstract><style face="normal" font="default" size="100%">Background: Genetic markers and linkage mapping are basic prerequisites for comparative genetic analyses, QTL detection and map-based cloning. A large number of mapping populations have been developed for oak, but few gene-based markers are available for constructing integrated genetic linkage maps and comparing gene order and QTL location across related species. Results: We developed a set of 573 expressed sequence tag-derived simple sequence repeats (EST-SSRs) and located 397 markers (EST-SSRs and genomic SSRs) on the 12 oak chromosomes (2n=2x=24) on the basis of Mendelian segregation patterns in 5 full-sib mapping pedigrees of two species: Quercus robur (pedunculate oak) and Quercus petraea (sessile oak). Consensus maps for the two species were constructed and aligned. They showed a high degree of macrosynteny between these two sympatric European oaks. We assessed the transferability of EST-SSRs to other Fagaceae genera and a subset of these markers was mapped in Castanea sativa, the European chestnut. Reasonably high levels of macrosynteny were observed between oak and chestnut. We also obtained diversity statistics for a subset of EST-SSRs, to support further population genetic analyses with gene-based markers. Finally, based on the orthologous relationships between the oak, Arabidopsis, grape, poplar, Medicago, and soybean genomes and the paralogous relationships between the 12 oak chromosomes, we propose an evolutionary scenario of the 12 oak chromosomes from the eudicot ancestral karyotype. Conclusions: This study provides map locations for a large set of EST-SSRs in two oak species of recognized biological importance in natural ecosystems. This first step toward the construction of a gene-based linkage map will facilitate the assignment of future genome scaffolds to pseudo-chromosomes. This study also provides an indication of the potential utility of new gene-based markers for population genetics and comparative mapping within and beyond the Fagaceae.</style></abstract><accession-num><style face="normal" font="default" size="100%">22931513</style></accession-num></record><record><source-app name="Biblio" version="7.x">Drupal-Biblio</source-app><ref-type>17</ref-type><contributors><authors><author><style face="normal" font="default" size="100%">Abril, Nieves</style></author><author><style face="normal" font="default" size="100%">Gion, Jean-Marc</style></author><author><style face="normal" font="default" size="100%">Kerner, René</style></author><author><style face="normal" font="default" size="100%">Müller-Starck, Gerhard</style></author><author><style face="normal" font="default" size="100%">Cerrillo, Rafael M. Navarro</style></author><author><style face="normal" font="default" size="100%">Plomion, Christophe</style></author><author><style face="normal" font="default" size="100%">Renaut, Jenny</style></author><author><style face="normal" font="default" size="100%">Valledor, Luis</style></author><author><style face="normal" font="default" size="100%">Jorrin-Novo, Jesús V.</style></author></authors></contributors><titles><title><style face="normal" font="default" size="100%">Proteomics research on forest trees, the most recalcitrant and orphan plant species.</style></title><secondary-title><style face="normal" font="default" size="100%">Phytochemistry</style></secondary-title></titles><keywords><keyword><style  face="normal" font="default" size="100%">Forest tree proteomics</style></keyword><keyword><style  face="normal" font="default" size="100%">forest trees</style></keyword><keyword><style  face="normal" font="default" size="100%">Plant proteomics</style></keyword><keyword><style  face="normal" font="default" size="100%">Woody plants</style></keyword></keywords><dates><year><style  face="normal" font="default" size="100%">2011</style></year><pub-dates><date><style  face="normal" font="default" size="100%">2011///</style></date></pub-dates></dates><urls><web-urls><url><style face="normal" font="default" size="100%">http://www.ncbi.nlm.nih.gov/pubmed/21353265</style></url></web-urls></urls><volume><style face="normal" font="default" size="100%">72</style></volume><pages><style face="normal" font="default" size="100%">1219 - 1242</style></pages><language><style face="normal" font="default" size="100%">eng</style></language><abstract><style face="normal" font="default" size="100%">The contribution of proteomics to the knowledge of forest tree (the most recalcitrant and almost forgotten plant species) biology is being reviewed and discussed, based on the author's own research work and papers published up to November 2010. This review is organized in four introductory sections starting with the definition of forest trees (1), the description of the environmental and economic importance (2) and its derived current priorities and research lines for breeding and conservation (3) including forest tree genomics (4). These precede the main body of this review: a general overview to proteomics (5) for introducing the forest tree proteomics section (6). Proteomics, defined as scientific discipline or experimental approach, it will be discussed both from a conceptual and methodological point of view, commenting on realities, challenges and limitations. Proteomics research in woody plants is limited to a reduced number of genera, including Pinus, Picea, Populus, Eucalyptus, and Fagus, mainly using first-generation approaches, e.g., those based on two-dimensional electrophoresis coupled to mass spectrometry. This area joins the own limitations of the technique and the difficulty and recalcitrance of the plant species as an experimental system. Furthermore, it contributes to a deeper knowledge of some biological processes, namely growth, development, organogenesis, and responses to stresses, as it is also used in the characterization and cataloguing of natural populations and biodiversity (proteotyping) and in assisting breeding programmes.</style></abstract><issue><style face="normal" font="default" size="100%">10</style></issue><notes><style face="normal" font="default" size="100%">The following values have no corresponding Zotero field:&lt;br/&gt;publisher: Elsevier Ltd&lt;br/&gt;accession-num: 21353265</style></notes></record></records></xml>