<?xml version="1.0" encoding="UTF-8"?><xml><records><record><source-app name="Biblio" version="7.x">Drupal-Biblio</source-app><ref-type>17</ref-type><contributors><authors><author><style face="normal" font="default" size="100%">de Heredia, U. L.</style></author><author><style face="normal" font="default" size="100%">JIMÉNEZ, P.</style></author><author><style face="normal" font="default" size="100%">Collada, Carmen</style></author></authors></contributors><titles><title><style face="normal" font="default" size="100%">Multi-marker phylogeny of three evergreen oaks reveals vicariant patterns in the Western Mediterranean</style></title><secondary-title><style face="normal" font="default" size="100%">Taxon</style></secondary-title></titles><keywords><keyword><style  face="normal" font="default" size="100%">AFLP</style></keyword><keyword><style  face="normal" font="default" size="100%">cpDNA</style></keyword><keyword><style  face="normal" font="default" size="100%">ITS</style></keyword><keyword><style  face="normal" font="default" size="100%">mediterranean quercus</style></keyword><keyword><style  face="normal" font="default" size="100%">phylogeny</style></keyword><keyword><style  face="normal" font="default" size="100%">vicariance</style></keyword></keywords><dates><year><style  face="normal" font="default" size="100%">2007</style></year><pub-dates><date><style  face="normal" font="default" size="100%">2007///</style></date></pub-dates></dates><urls><web-urls><url><style face="normal" font="default" size="100%">http://www.ingentaconnect.com/content/iapt/tax/2007/00000056/00000004/art00016</style></url></web-urls></urls><volume><style face="normal" font="default" size="100%">56</style></volume><pages><style face="normal" font="default" size="100%">1209 - 1220</style></pages><language><style face="normal" font="default" size="100%">eng</style></language><abstract><style face="normal" font="default" size="100%">Nuclear (AFLPs and ITSs) and chloroplast DNA markers (cpDNA) were analysed in Quercus suber L., Q. ilex L. and Q. coccifera L. in order to detect vicariant patterns in the Western Mediterranean Basin populations. Clustering methods, i.e., parsimony, minimum spanning network, UPGMA and PCO, were used to obtain robust phylogenies. The Mantel test was used to check the geographic structure of the populations. Nuclear markers’ based phylogenies showed high bootstrap values at basal nodes of clusters indicative of species. Within species, Q. suber and Q. ilex showed three and two groups respectively with strong geographic structure for cytoplasmic and nuclear markers. In contrast, Q. coccifera had overlapping cpDNA lineages and nuclear markers did not show any group with strong geographic structure. Taxonomic assignation of the species was well-supported by our data. Ongoing allopatric speciation was inferred for Q. suber and Q. ilex derived from Pliocene vicariant events. Quercus coccifera showed a more homogeneous genetic pattern in the Western Mediterranean.</style></abstract><issue><style face="normal" font="default" size="100%">November</style></issue></record><record><source-app name="Biblio" version="7.x">Drupal-Biblio</source-app><ref-type>17</ref-type><contributors><authors><author><style face="normal" font="default" size="100%">de Heredia, U L</style></author><author><style face="normal" font="default" size="100%">Jimenez, P</style></author><author><style face="normal" font="default" size="100%">Collada, Carmen</style></author></authors></contributors><titles><title><style face="normal" font="default" size="100%">Multi-marker phylogeny of three evergreen oaks reveals vicariant patterns in the Western Mediterranean</style></title><secondary-title><style face="normal" font="default" size="100%">Taxon</style></secondary-title></titles><keywords><keyword><style  face="normal" font="default" size="100%">AFLP</style></keyword><keyword><style  face="normal" font="default" size="100%">cpDNA</style></keyword><keyword><style  face="normal" font="default" size="100%">ITS</style></keyword><keyword><style  face="normal" font="default" size="100%">mediterranean quercus</style></keyword><keyword><style  face="normal" font="default" size="100%">phylogeny</style></keyword><keyword><style  face="normal" font="default" size="100%">vicariance</style></keyword></keywords><dates><year><style  face="normal" font="default" size="100%">2007</style></year></dates><volume><style face="normal" font="default" size="100%">56</style></volume><pages><style face="normal" font="default" size="100%">1209-1220</style></pages><language><style face="normal" font="default" size="100%">eng</style></language><abstract><style face="normal" font="default" size="100%">Nuclear (AFLPs and ITSs) and chloroplast DNA markers (cpDNA) were analysed in Quercus suber L., Q. ilex L. and Q. coccifera L. in order to detect vicariant patterns in the Western Mediterranean Basin populations. Clustering methods, i.e., parsimony, minimum spanning network, UPGMA and PCO, were used to obtain robust phylogenies. The Mantel test was used to check the geographic structure of the populations. Nuclear markers’ based phylogenies showed high bootstrap values at basal nodes of clusters indicative of species. Within species, Q. suber and Q. ilex showed three and two groups respectively with strong geographic structure for cytoplasmic and nuclear markers. In contrast, Q. coccifera had overlapping cpDNA lineages and nuclear markers did not show any group with strong geographic structure. Taxonomic assignation of the species was well-supported by our data. Ongoing allopatric speciation was inferred for Q. suber and Q. ilex derived from Pliocene vicariant events. Quercus coccifera showed a more homogeneous genetic pattern in the Western Mediterranean.</style></abstract></record><record><source-app name="Biblio" version="7.x">Drupal-Biblio</source-app><ref-type>17</ref-type><contributors><authors><author><style face="normal" font="default" size="100%">Arenal, Francisco</style></author><author><style face="normal" font="default" size="100%">Platas, Gonzalo</style></author><author><style face="normal" font="default" size="100%">Pelaez, Fernando</style></author></authors></contributors><titles><title><style face="normal" font="default" size="100%">A new endophytic species of Preussia (Sporormiaceae) inferred from morphological observations and molecular phylogenetic analysis</style></title><secondary-title><style face="normal" font="default" size="100%">FUNGAL DIVERSITY</style></secondary-title></titles><keywords><keyword><style  face="normal" font="default" size="100%">Ascomycota</style></keyword><keyword><style  face="normal" font="default" size="100%">Bayesian analysis</style></keyword><keyword><style  face="normal" font="default" size="100%">elongation factor</style></keyword><keyword><style  face="normal" font="default" size="100%">ITS</style></keyword><keyword><style  face="normal" font="default" size="100%">LSU</style></keyword><keyword><style  face="normal" font="default" size="100%">maximum likelihood</style></keyword><keyword><style  face="normal" font="default" size="100%">phylogeny</style></keyword><keyword><style  face="normal" font="default" size="100%">rDNA</style></keyword><keyword><style  face="normal" font="default" size="100%">Spain</style></keyword><keyword><style  face="normal" font="default" size="100%">Sporormiaceae</style></keyword><keyword><style  face="normal" font="default" size="100%">taxonomy</style></keyword></keywords><dates><year><style  face="normal" font="default" size="100%">2007</style></year><pub-dates><date><style  face="normal" font="default" size="100%">2007///</style></date></pub-dates></dates><volume><style face="normal" font="default" size="100%">25</style></volume><pages><style face="normal" font="default" size="100%">1 - 17</style></pages><language><style face="normal" font="default" size="100%">eng</style></language><abstract><style face="normal" font="default" size="100%">A new species of Preussia as an endophyte of different typical Mediterranean plant species is newly described and illustrated based on molecular and morphological features. Preussia mediterranea resembles P. australis, P. africana and P. similis from a morphological point of view, but appeared closer to P. minima and P. isabellae by molecular analysis. Phylogenetic analysis of the entire ITS region combined with the D1-D2 domains of the 28S rRNA gene, and a fragment of the elongation factor EF-1 alpha gene, using Maximum Likelihood and a Bayesian Markov Chain Monte Carlo approach, generally resulted in statistically well-supported clades for all the species studied. Morphological data and molecular phylogenetic analysis supported the recognition of the new taxon.</style></abstract><notes><style face="normal" font="default" size="100%">The following values have no corresponding Zotero field:&lt;br/&gt;pub-location: NORTHEAST FORESTRY UNIV, HARBIN, 00000, PEOPLES R CHINA&lt;br/&gt;publisher: FUNGAL DIVERSITY PRESS</style></notes></record><record><source-app name="Biblio" version="7.x">Drupal-Biblio</source-app><ref-type>17</ref-type><contributors><authors><author><style face="normal" font="default" size="100%">Alves, Artur</style></author><author><style face="normal" font="default" size="100%">Phillips, Alan J. L.</style></author><author><style face="normal" font="default" size="100%">Henriques, Isabel</style></author><author><style face="normal" font="default" size="100%">Correia, António</style></author></authors></contributors><titles><title><style face="normal" font="default" size="100%">Evaluation of amplified ribosomal DNA restriction analysis as a method for the identification of Botryosphaeria species.</style></title><secondary-title><style face="normal" font="default" size="100%">FEMS microbiology letters</style></secondary-title></titles><keywords><keyword><style  face="normal" font="default" size="100%">ARDRA</style></keyword><keyword><style  face="normal" font="default" size="100%">Botryosphaeria</style></keyword><keyword><style  face="normal" font="default" size="100%">D1/D2 domains</style></keyword><keyword><style  face="normal" font="default" size="100%">ITS</style></keyword><keyword><style  face="normal" font="default" size="100%">rDNA</style></keyword><keyword><style  face="normal" font="default" size="100%">Species identification</style></keyword></keywords><dates><year><style  face="normal" font="default" size="100%">2005</style></year><pub-dates><date><style  face="normal" font="default" size="100%">2005///</style></date></pub-dates></dates><urls><web-urls><url><style face="normal" font="default" size="100%">http://www.ncbi.nlm.nih.gov/pubmed/15837376</style></url></web-urls></urls><volume><style face="normal" font="default" size="100%">245</style></volume><pages><style face="normal" font="default" size="100%">221 - 229</style></pages><language><style face="normal" font="default" size="100%">eng</style></language><abstract><style face="normal" font="default" size="100%">The polymerase chain reaction was used to amplify a rDNA fragment containing the internal transcribed spacers (ITS1-5.8S-ITS2) and the D1/D2 variable domains of the 28S rDNA from 10 species of the genus Botryosphaeria (Fungi, Ascomycota). Restriction analysis of the amplicons with frequent-cutting endonucleases (amplified ribosomal DNA restriction analysis) allowed the definition of 12 rDNA haplotypes. Each of the rDNA haplotypes could be unambiguously assigned to a single Botryosphaeria species, thus allowing clear identification of all the species tested. Intraspecific polymorphism was very low and detected only in Botryosphaeria parva and Botryosphaeria dothidea. Cluster analysis of banding patterns of the isolates corresponded well with known species delineations. The method described in this paper provides a simple and rapid procedure for the differentiation and identification of Botryosphaeria isolates at the species level.</style></abstract><issue><style face="normal" font="default" size="100%">2</style></issue><notes><style face="normal" font="default" size="100%">The following values have no corresponding Zotero field:&lt;br/&gt;accession-num: 15837376</style></notes></record><record><source-app name="Biblio" version="7.x">Drupal-Biblio</source-app><ref-type>17</ref-type><contributors><authors><author><style face="normal" font="default" size="100%">Alves, Artur</style></author><author><style face="normal" font="default" size="100%">Phillips, Alan J L</style></author><author><style face="normal" font="default" size="100%">Henriques, Isabel</style></author><author><style face="normal" font="default" size="100%">Correia, António</style></author></authors></contributors><titles><title><style face="normal" font="default" size="100%">Evaluation of amplified ribosomal DNA restriction analysis as a method for the identification of Botryosphaeria species.</style></title><secondary-title><style face="normal" font="default" size="100%">FEMS microbiology letters</style></secondary-title></titles><keywords><keyword><style  face="normal" font="default" size="100%">ARDRA</style></keyword><keyword><style  face="normal" font="default" size="100%">Botryosphaeria</style></keyword><keyword><style  face="normal" font="default" size="100%">D1/D2 domains</style></keyword><keyword><style  face="normal" font="default" size="100%">ITS</style></keyword><keyword><style  face="normal" font="default" size="100%">rDNA</style></keyword><keyword><style  face="normal" font="default" size="100%">Species identification</style></keyword></keywords><dates><year><style  face="normal" font="default" size="100%">2005</style></year></dates><volume><style face="normal" font="default" size="100%">245</style></volume><pages><style face="normal" font="default" size="100%">221-229</style></pages><language><style face="normal" font="default" size="100%">eng</style></language><abstract><style face="normal" font="default" size="100%">The polymerase chain reaction was used to amplify a rDNA fragment containing the internal transcribed spacers (ITS1-5.8S-ITS2) and the D1/D2 variable domains of the 28S rDNA from 10 species of the genus Botryosphaeria (Fungi, Ascomycota). Restriction analysis of the amplicons with frequent-cutting endonucleases (amplified ribosomal DNA restriction analysis) allowed the definition of 12 rDNA haplotypes. Each of the rDNA haplotypes could be unambiguously assigned to a single Botryosphaeria species, thus allowing clear identification of all the species tested. Intraspecific polymorphism was very low and detected only in Botryosphaeria parva and Botryosphaeria dothidea. Cluster analysis of banding patterns of the isolates corresponded well with known species delineations. The method described in this paper provides a simple and rapid procedure for the differentiation and identification of Botryosphaeria isolates at the species level.</style></abstract><accession-num><style face="normal" font="default" size="100%">15837376</style></accession-num></record><record><source-app name="Biblio" version="7.x">Drupal-Biblio</source-app><ref-type>17</ref-type><contributors><authors><author><style face="normal" font="default" size="100%">Samuel, Rosabelle</style></author><author><style face="normal" font="default" size="100%">Bachmair, Andreas</style></author></authors></contributors><titles><title><style face="normal" font="default" size="100%">ITS sequences from nuclear rDNA suggest unexpected phylogenetic relationships between Euro-Mediterranean, East Asiatic and North American taxa ofQuercus (</style></title><secondary-title><style face="normal" font="default" size="100%">Plant systematics and …</style></secondary-title></titles><keywords><keyword><style  face="normal" font="default" size="100%">Castanea</style></keyword><keyword><style  face="normal" font="default" size="100%">Fagaceae</style></keyword><keyword><style  face="normal" font="default" size="100%">Fagus. - Nuclear rDNA</style></keyword><keyword><style  face="normal" font="default" size="100%">ITS</style></keyword><keyword><style  face="normal" font="default" size="100%">molecular phylogeny</style></keyword><keyword><style  face="normal" font="default" size="100%">molecular systematics</style></keyword><keyword><style  face="normal" font="default" size="100%">N Hemisphere</style></keyword><keyword><style  face="normal" font="default" size="100%">Phytogeography</style></keyword><keyword><style  face="normal" font="default" size="100%">Quercus</style></keyword></keywords><dates><year><style  face="normal" font="default" size="100%">1998</style></year></dates><volume><style face="normal" font="default" size="100%">211</style></volume><pages><style face="normal" font="default" size="100%">129-139</style></pages><language><style face="normal" font="default" size="100%">eng</style></language><abstract><style face="normal" font="default" size="100%">Nucleotide sequences from the internal transcribed spacer (ITS) regions of the 18S-26S nuclear ribosomal DNA have been studied from ten species of Quercus (representing four subgenera), Castanea sativa and Fagus sylvatica, as a preliminary molecular contribution to the still poorly understood systematics and evolution of Fagaceae. The resulting matrix has been used to calculate pair-wise sequence divergence indices and to construct a maximum parsimony tree for Quercus coding indels as a fifth state. Divergence is greater for Quercus vs. Fagus than for Quercus vs. Castanea. The tree for the Quercus taxa studied reveals two clearly divergent clades. In clade I the evergreen W Mediterranean Q. suber appears in a basal position as sister to more distal deciduous taxa, i.e. the E Mediterranean Q. macrolepis and the E Asiatic Q. acutissima (all formerly united as different sections under the apparently polyphyletic subg. Cerris), and Q. rubra (a representative of the N American subg. Erythrobalanus), forming a pair with Q. acutissima. In clade II the evergreen southeastem N American Q. virginiana is basal and sister to the remaining three branches, i.e. a pair of evergreen Mediterranean taxa with Q. ilex and Q. coccifera (subg. Sclerophyllodrys), the deciduous but otherwise plesiomorphic SE European/SW Asiatic Q. cerris (type species of subg. Cerris), and the related but more apomorphic European pair Q. petraea and Q. robur (subg. Quercus). These results partly conflict with current taxonomic classification but a_re supported by some anatomical and morphological characters. They document polyphyletic lines from evergreen to deciduous taxa and suggest Tertiary transcontinental connections within the genus.</style></abstract></record></records></xml>